International Publications (last five years)

  1. Production of poly-3-(hydroxybutyrate-co-hydroxyvalerate) by Haloferaxmediterranei using rice-based ethanol stillage with simultaneous recovery and re-use of medium salts: Anirban Bhattacharyya, JayeetaSaha, SaubhikHaldar, AsitBhowmic, Ujjal Kumar Mukhopadhyay, Joydeep Mukherjee: Extremophiles, 18, 463–470, 2014
  2. Draft genome sequence of Pseudoalteromonas strain NW 4327 (MTCC 11073, DSM 25418), a pathogen of the Great Barrier Reef sponge Rhopaloeides odorabile: Jayanta D. Choudhury, ArnabPramanik, Nicole S. Webster, Lyndon E. Llewellyn, RatanGachhui, Joydeep Mukherjee: Genome Announcements, January/February 2014 Volume 2 Issue 1 e00001-14, 2014
  3. Ecological roles and biotechnological applications of marine and intertidal microbial biofilms (invited review article): Mitra S, Sana B and Mukherjee J: Special issue “Productive Biofilms” in Advances in Biochemical Engineering and Biotechnology, 146, 163-205, 2014
  4. Environmental microbiology and biotechnology: progress and prospects (invited review article): Joydeep Mukherjee: ChemieIngenieurTechnik 86, 12, 1-15, 2014
  5. Simultaneous heterotrophic nitrification and aerobic denitrification by Chryseobacterium R31 isolated from abattoir wastewater: PradyutKundu, ArnabPramanik, ArpitaDasgupta, Somnath Mukherjee, Joydeep Mukherjee: BioMed Research International, Article ID 436056, 2014
  6. Synthesis and antibacterial evaluation of 3,3,0-diindolylmethane derivatives: Sutapa Roy, Rahul Gajbhiye, MadhumitaMandal, Churala Pal, ArumugamMeyyapan, Joydeep Mukherjee, ParasuramanJaisankar: Medicinal Chemistry Research, 23, 1371-1377, 2014
  7. Integration of poly-3-(hydroxybutyrate-co-hydroxyvalerate) production by Haloferaxmediterranei through utilization of stillage from rice-based ethanol manufacture in India and its techno-economic analysis: Anirban Bhattacharyya, Kuntal Jana, SaubhikHaldar, AsitBhowmic, Ujjal Kumar Mukhopadhyay, Sudipta De, Joydeep Mukherjee:World Journal of Microbiology and Biotechnology, 31 (5), 717-727, 2015
  8. The pathogen of the Great Barrier Reef sponge Rhopaloeides odorabile is a new strain of Pseudoalteromonas agarivorans containing abundant and diverse virulence-related genes: Jayanta D. Choudhury, ArnabPramanik, Nicole S. Webster, Lyndon E. Llewellyn, RatanGachhui, Joydeep Mukherjee: Marine Biotechnology, 17 (4), 463-478, 2015
  9. Enhanced biofilm formation and melanin synthesis by the oyster settlement-promoting Shewanellacolwelliana is related to hydrophobic surface and simulated intertidal environment: SayaniMitra, RatanGachhui, Joydeep Mukherjee: Biofouling: The Journal of Bioadhesion and Biofilm Research, 31 (3), 283-296, 2015
  10. Conversion of rural abattoir wastes to an organic fertilizer and its application in the field cultivation of tomato in India: Malancha Roy, Rimi Das, AnupamDebsarcar, Pradip Kumar Sen, Joydeep Mukherjee: Renewable Agriculture and Food Systems, 31 (4), 350-360, 2016
  11. Polymerase chain reaction-based screening method applicable universally to environmental haloarchaea and halobacteria for identifying polyhydroxyalkanoate producers amongst them: RiddhiMahansaria, JayantaDebabrataChoudhury, Joydeep Mukherjee: Extremophiles, 19, 1041-1054, 2015
  12. Organic cultivation of tomato in India with recycled slaughterhouse waste: Evaluation of fertilizer and food safety. Malancha Roy,Rimi Das, Amit Kundu, Sanmoy Karmakar, Satadal Das, Pradip Kr Sen, Anupam Deb Sarkar, Joydeep Mukherjee MDPI Agriculture, Special issue  “Recycling Organic Wastes in Agriculture” 5, 826-856,2015
  13. Marine enzymes-production and applications: Kai Muffler, Barindra Sana, Joydeep Mukherjee, Roland Ulber: Book chapter in Springer Handbook of Marine Biotechnology, Se-Kwon Kim (Editor), 2015
  14. Antimicrobial properties of Kalanchoeblossfeldiana: A focus on drug resistance with particular reference to quorum sensing mediated bacterial biofilm formation: RatulSarkar, ChaitaliMondal, RammohanBera, SumonChakraborty, RajibBarik, Paramita Roy, Alekh Kumar, Kirendra K. Yadav, JayantaChoudhury, Sushil K. Chaudhary, Samir K. Samanta, SanmoyKarmakar, Satadal Das, Pulok K. Mukherjee, Joydeep Mukherjee, TuhinadriSen: Journal of Pharmacy and Pharmacology, 67, 951-962, 2015
  15. Removal of fluoride contamination in water by three aquatic plants: SukalpaKarmakar, JoydeepMukerjee, Somnath Mukherjee: International Journal of Phytoremediation: 18 (3), 222-227, 2016
  16. Streptomyces euryhalinus nov., a new actinomycete isolated from a mangrove forest: KaushikBiswas, JayantaDebabrataChoudhury, RiddhiMahansaria, Malay Saha, Joydeep Mukherjee: Journal of Antibiotics (Nature Publishing Group), 70, 747-753, 2017
  17. Isolation of indigenous Staphylococcus sciuri from chromium-contaminated paddy field and its application for reduction of Cr(VI) in rice plants cultivated in pots: AvishekDutta, SayantiGhosh, Jayanta D Choudhury, RiddhiMahansaria, Malancha Roy, Ashish Kumar Ghosh, TaritRoychowdhury, Joydeep Mukherjee: Bioremediation Journal, 21, 30-37, 2017
  18. Production enhancement and characterization of the polyhydroxyalkanoate produced by Natrinemaajinwuensis (as synonym) ≡ Natrinemaaltunense strain RM-G10: RiddhiMahansaria, AnusuaDhara, AmitSaha, SaubhikHaldar, Joydeep Mukherjee: International Journal of Biological Macromolecules, 107:1480-90, 2017
  19. A new collagenase enzyme of the marine sponge pathogen Pseudoalteromonas agarivorans NW4327 is uniquely linked with a TonB dependent receptor: Sayak Bhattacharya, JayantaDebabrataChoudhury, RatanGachhui, Joydeep Mukherjee: International Journal of Biological Macromolecules, 109, 1140-1146. 2017
  20. Biosorption of fluoride by water lettuce (Pistiastratiotes) from contaminated water: SukalpaKarmakar, Joydeep Mukherjee, Somnath Mukherjee: International Journal of Environmental Science and Technology, 15(4), 801-810, 2018
  21. Effects of flask configuration on biofilm growth and metabolites of intertidal cyanobacteria isolated from a mangrove forest: MaruthanayagamVeerapathiran, SandeepChakraborty, SayaniMitra, SanmoyKarmakar, Joydeep Mukherjee: Journal of Applied Microbiology, 125(1), 190-202, 2018
  22. Mathematical modelling for phytoplankton distribution in Sundarbans Estuarine System, India: Tanaya Das, SaranyaChakraborti, Joydeep Mukherjee, Goutam Kumar Sen: Ecological Modelling, 368, 111-120, 2018
  23. Oxynema aestuarii sp. nov.(Microcoleaceae) isolated from an Indian mangrove forest. Sandeep Chakraborty, Veerabadhran Maruthanayagam, Anushree Achari, Riddhi Mahansaria, Arnab Pramanik, Parasuraman Jaisankar, and Joydeep Mukherjee: Phytotaxa, 374(1), 024-040, 2018
  24. A new collagenase enzyme of the marine sponge pathogen Pseudoalteromonas agarivorans NW4327 is uniquely linked with a TonB dependent receptor. Sayak Bhattacharya, Jayanta Debabrata Choudhury, Ratan Gachhui, and Joydeep Mukherjee: International journal of biological macromolecules,109, 1140-1146, 2018
  25. Biosorption of fluoride by water lettuce (Pistia stratiotes) from contaminated water. Sukalpa Karmakar, Joydeep Mukherjee, and Somnath Mukherjee: International journal of environmental science and technology,15(4), 801-810 , 2018
  26. U32 collagenase from Pseudoalteromonas agarivorans NW4327: Activity, structure, substrate interactions and molecular dynamics simulations. Sayak Bhattacharya, Sourya Bhattacharya, Ratan Gachhui, Saugata Hazra, and Joydeep Mukherjee: International journal of biological macromolecules, 124, 635-650,2019
  27. Application of Microbial-Induced Carbonate Precipitation for Soil Improvement via Ureolysis, Siddhartha Mukherjee, R. B. Sahu, Joydeep Mukherjee, and Suchandra Sadhu: Ground Improvement Techniques and Geosynthetics. Springer, Singapore, 85-94, 2019
  28. Enhancing the efficiency of disc membrane chromatography modules by using a flow directing layer,Pedram Madadkar, Riddhi Mahansaria, Joydeep Mukherjee, and Raja Ghosh: Journal of membrane science 580: 154-160,2019.
  29. Monitoring of biofilms grown on differentially structured metallic surfaces using confocal laser scanning microscopy, Daniel Kleine, Jonas Chodorski, Sayani Mitra, Christin Schlegel, Katharina Huttenlochner, Christine MüllerRenno, Joydeep Mukherjee, Christiane Ziegler, and Roland Ulber: Engineering in Life Sciences, 19(7), 513-521,2019
  30. Removal of Pb (II), As (III), and Cr (VI) by nitrogen‐starved Papiliotrema laurentii strain RY1, Soumyadev Sarkar, Avishek Mukherjee, Rubia Parvin, Subhadeep Das, Uttariya Roy, Somdeep Ghosh, Punarbasu Chaudhuri et al.: Journal of basic microbiology, 59(10):1016-1030, 2019
  31. Euryhalinema mangrovii gen. nov., sp. nov. and Leptoelongatus litoralis gen. nov., sp. nov.(Leptolyngbyaceae) isolated from an Indian mangrove forest, Sandeep Chakraborty, Veerabardhan Marythanayagam, Anushree Achari, Arnab Pramanik, Parasuraman Jaisankar, Joydeep Mukherjee: Phytotaxa ;422 (1):058-74, 2019
  32. Structural elucidation and antimicrobial activity of a diketopiperazine isolated from a Bacillus sp. associated with the marine sponge Spongia officinalis, Dhruba Bhattacharya, Tapan Kumar Lai, Amit Saha, Joseph Selvin, and Joydeep Mukherjee: Natural product research, 2019 (Article in press)

Report

Microbial diversity: distribution, ecology and biotechnology: Anindita Mitra and Joydeep Mukherjee (Invited chapter) in Environmental management and biodiversity conservation plan for Sundarbans biodiversity, submitted by the World Wildlife Fund to the World Bank.

Patent

Enhanced surface area conico-cylindrical flask (ES-CCF) for biofilm cultivation: US Patent No.: US 8,945,917 B2, Date of patent: February 3rd, 2015. Inventors: Sreyashi Sarkar, Debashis Roy, Joydeep Mukherjee

GenBank submissions on marine/estuarine bacteria

phaC gene sequences of haloarchaea and halobacteria obtained from Gujarat and West Bengal coasts of India

KP076317
KP076318
KP076319
KP076320
KP076321
KP076322
KP076323
KP076324
KP076325
KP076326
KP076327
KP076328
KP076329
KP076330
KP076331
KP076332
KP076333
KP076334
KP076335
KP076336
KP076337
KP076338
KP076339
KP076340
KP076312
KP076313
KP076314
KP076315
KP076316

16S rRNA gene sequences of haloarchaeal and halobacterial environmental isolates obtained from Gujarat and West Bengal coasts of India

KP076341
KP076342
KP076343
KP076344
KP127856
KP076345
KP076346
KP127855
KP076347
KP076348
KP076298
KP076299
KP076300
KP076301
KP076302
KP076303
KP076304
KP076305
KP076306
KP076307
KP076308
KP076309
KP076310
KP076311

16S r RNA gene sequences of cultivable cyanobacteria

FJ847842
FJ847843
EU908684
EU908683
EU908682

16S r RNA gene sequences of cultivable actinomycetes

AY550275
AY144607
AY546088
EU909162
FJ207392
EU909161
FJ207391
FJ207393
FJ207390
FJ207394
FJ848371
FJ848370
FJ848372
FJ848373

16S r RNA gene sequences of commercial enzyme producers

AY723744 (Marinobacterium sp., asparaginase producer)
AY723697 (Bacillus sp., esterase producer)
AY723698 (Bacillus sp., nitrilase producer)
AY723743 (Flavobacterium sp., RNAase producer)
AY584868 (Pseudomonus sp., protease producer)